Python and Oracle : Fetching records and setting buffer size

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If you used other languages, including Oracle PL/SQL, more than likely you will have experienced having to play buffering the number of records that are returned from a cursor. Typically this is needed when you are processing more than a few hundred records. The default buffering size is relatively small and by increasing the size of the number of records to be buffered can dramatically improve the performance of your code.

As with all things in coding and IT, the phrase “It Depends” applies here and changing the buffering size may not be what you need and my not help you to gain optimal performance for your code.

There are lots and lots of examples of how to test this in PL/SQL and other languages, but what I’m going to show you here in this blog post is to change the buffering size when using Python to process data in an Oracle Database using the Oracle Python library cx_Oracle.

Let us begin with taking the defaults and seeing what happens. In this first scenario the default buffering is used. Here we execute a query and the process the records in a FOR loop (yes these is a row-by-row, slow-by-slow approach.

import time

i = 0
# define a cursor to use with the connection
cur2 = con.cursor()
# execute a query returning the results to the cursor
print("Starting cursor at", time.ctime())
cur2.execute('select * from sh.customers')
print("Finished cursor at", time.ctime())

# for each row returned to the cursor, print the record
print("Starting for loop", time.ctime())
t0 = time.time()
for row in cur2:
    i = i+1
    if (i%10000) == 0:
        print(i,"records processed", time.ctime())

              
t1 = time.time()
print("Finished for loop at", time.ctime())
print("Number of records counted = ", i)

ttime = t1 - t0
print("in ", ttime, "seconds.")

This gives us the following output.

Starting cursor at  10:11:43
Finished cursor at  10:11:43
Starting for loop  10:11:43
10000 records processed  10:11:49
20000 records processed  10:11:54
30000 records processed  10:11:59
40000 records processed  10:12:05
50000 records processed  10:12:09
Finished for loop at  10:12:11 
Number of records counted =  55500
in  28.398550033569336 seconds.

Processing the data this way takes approx. 28 seconds and this corresponds to the buffering of approx 50-75 records at a time. This involves many, many, many round trips to the the database to retrieve this data. This default processing might be fine when our query is only retrieving a small number of records, but as our data set or results set from the query increases so does the time it takes to process the query.

But we have a simple way of reducing the time taken, as the number of records in our results set increases. We can do this by increasing the number of records that are buffered. This can be done by changing the size of the ‘arrysize’ for the cursor definition. This reduces the number of “roundtrips” made to the database, often reducing networks load and reducing the number of context switches on the database server.

The following gives an example of same code with one additional line.

cur2.arraysize = 500

Here is the full code example.

# Test : Change the arraysize and see what impact that has
import time

i = 0
# define a cursor to use with the connection
cur2 = con.cursor()
cur2.arraysize = 500
# execute a query returning the results to the cursor
print("Starting cursor at", time.ctime())
cur2.execute('select * from sh.customers')
print("Finished cursor at", time.ctime())

# for each row returned to the cursor, print the record
print("Starting for loop", time.ctime())
t0 = time.time()
for row in cur2:
    i = i+1
    if (i%10000) == 0:
        print(i,"records processed", time.ctime())

              
t1 = time.time()
print("Finished for loop at", time.ctime())
print("Number of records counted = ", i)

ttime = t1 - t0
print("in ", ttime, "seconds.")

Now the response time to process all the records is.

Starting cursor at 10:13:02
Finished cursor at 10:13:02
Starting for loop 10:13:02
10000 records processed 10:13:04
20000 records processed 10:13:06
30000 records processed 10:13:08
40000 records processed 10:13:10
50000 records processed 10:13:12
Finished for loop at 10:13:13
Number of records counted = 55500
in 11.780734777450562 seconds.

All done in just under 12 seconds, compared to 28 seconds previously.

Here is another alternative way of processing the data and retrieves the entire results set, using the ‘fetchall’ command, and stores it located in ‘res’.

Oracle 18c DBaaS Cloud Setup

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The 18c Oracle DBaaS is now available. This is the only place that Oracle 18c will be available until later in 2018. So if you want to try it out, then you are going to need to get some Oracle Cloud credits, or you may already have a paying account for Oracle Cloud.

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The following outlines the steps you need to go through to gets Oracle 18c setup.

1. Log into your Oracle Cloud

Log into your Oracle Cloud environment. Depending on your access path you will get to your dashboard.

Select Create Instance from the dashboard.

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2. Create a new Database

From the list of services to create, select Database.

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3. Click ‘Create Instance’

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4. Enter the Database Instance details

Enter the details for your new Oracle 18c Database. I’ve called mine ‘db18c’.

Then for the Software Release dropdown list, select ‘Oracle Database 18c’.

Next select the Software Edition from the dropdown list.

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5. Fill in the Instance Details

Fill in the details for ‘DB Name’, ‘PDB Name’, ‘Administration Password’, ‘Confirm Password’, setup the SSH Public Key, and then decide if you need the Backup and Recovery option.

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6. Create the DBaaS

Double check everything and when ready click on the ‘Create’ button.

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7. Wait for Everything to be Create

Now is the time to be patient and wait while your cloud service is created.

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I’ve created two different version of the 18c Oracle DBaaS. The Enterprise Edition to 30 minutes to complete and the High Performance service too 47 minutes.

No it’s time to go play.

18c is now available (but only on the Cloud)

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On Friday afternoon (16th February) we started to see tweets and blog posts from people in Oracle saying that Oracle 18c was now available. But is only available on Oracle Cloud and Engineered Systems.

It looks like we will have to wait until the Autumn before we can install it ourselves on our own servers 😦

Here is the link to the official announcement for Oracle 18c.

Oracle 18c is really Oracle 12.2.0.2. The next full new release of the Oracle database is expected to be Oracle 19.

The new features and incremental enhancements in Oracle 18c are:

  • Multitenant
  • In-Memory
  • Sharding
  • Memory Optimized Fetches
  • Exadata RAC Optimizations
  • High Availability
  • Security
  • Online Partition Merge
  • Improved Machine Learning (OAA)
  • Polymorphic Table Functions
  • Spatial and Graph
  • More JSON improvements
  • Private Temporary Tablespaces
  • New mode for Connection Manager

And now the all important links to the documentation.

Oracle 18c Documentation

Oracle 18c New Features

Oracle 18c Data Warehousing

To give Oracle 18c a try you will need to go to cloud.oracle.com and select Database from the drop down list from the Platform menu. Yes you are going to need an Oracle Cloud account and some money or some free credit. Go and get some free cloud credits at the upcoming Oracle Code events.

If you want a ‘free’ way of trying out Oracle 18c, you can use Oracle Live SQL. They have setup some examples of the new features for you to try.

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NOTE: Oracle 18c is not Autonomous. Check out Tim Hall’s blog posts about this. The Autonomous Oracle Database is something different, and we will be hearing more about this going forward.

Oracle and Python setup with cx_Oracle

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Is Python the new R?

Maybe, maybe not, but that I’m finding in recent months is more companies are asking me to use Python instead of R for some of my work.

In this blog post I will walk through the steps of setting up the Oracle driver for Python, called cx_Oracle. The documentation for this drive is good and detailed with plenty of examples available on GitHub. Hopefully there isn’t anything new in this post, but it is my experiences and what I did.

1. Install Oracle Client

The Python driver requires Oracle Client software to be installed. Go here, download and install. It’s a straightforward install. Make sure the directories are added to the search path.

2. Download and install cx_Oracle

You can use pip3 to do this.

pip3 install cx_Oracle

Collecting cx_Oracle
  Downloading cx_Oracle-6.1.tar.gz (232kB)
    100% |████████████████████████████████| 235kB 679kB/s
Building wheels for collected packages: cx-Oracle
  Running setup.py bdist_wheel for cx-Oracle ... done
  Stored in directory: /Users/brendan.tierney/Library/Caches/pip/wheels/0d/c4/b5/5a4d976432f3b045c3f019cbf6b5ba202b1cc4a36406c6c453
Successfully built cx-Oracle
Installing collected packages: cx-Oracle
Successfully installed cx-Oracle-6.1

3. Create a connection in Python

Now we can create a connection. When you see some text enclosed in angled brackets <>, you will need to enter your detailed for your schema and database server.

# import the Oracle Python library
import cx_Oracle

# define the login details
p_username = ""
p_password = ""
p_host = ""
p_service = ""
p_port = "1521"

# create the connection
con = cx_Oracle.connect(user=p_username, password=p_password, dsn=p_host+"/"+p_service+":"+p_port)

# an alternative way to create the connection
# con = cx_Oracle.connect('/@/:1521')

# print some details about the connection and the library
print("Database version:", con.version)
print("Oracle Python version:", cx_Oracle.version)


Database version: 12.1.0.1.0
Oracle Python version: 6.1

4. Query some data and return results to Python

In this example the query returns the list of tables in the schema.

# define a cursor to use with the connection
cur = con.cursor()
# execute a query returning the results to the cursor
cur.execute('select table_name from user_tables')
# for each row returned to the cursor, print the record
for row in cur:
    print("Table: ", row)

Table:  ('DECISION_TREE_MODEL_SETTINGS',)
Table:  ('INSUR_CUST_LTV_SAMPLE',)
Table:  ('ODMR_CARS_DATA',)

Now list the Views available in the schema.

# define a second cursor
cur2 = con.cursor()
# return the list of Views in the schema to the cursor
cur2.execute('select view_name from user_views')
# display the list of Views
for result_name in cur2:
    print("View: ", result_name)

View:  ('MINING_DATA_APPLY_V',)
View:  ('MINING_DATA_BUILD_V',)
View:  ('MINING_DATA_TEST_V',)
View:  ('MINING_DATA_TEXT_APPLY_V',)
View:  ('MINING_DATA_TEXT_BUILD_V',)
View:  ('MINING_DATA_TEXT_TEST_V',)

5. Query some data and return to a Panda in Python

Pandas are commonly used for storing, structuring and processing data in Python, using a data frame format. The following returns the results from a query and stores the results in a panda.

# in this example the results of a query are loaded into a Panda
# load the pandas library
import pandas as pd

# execute the query and return results into the panda called df
df = pd.read_sql_query("SELECT * from INSUR_CUST_LTV_SAMPLE", con)

# print the records returned by query and stored in panda
print(df.head())

 CUSTOMER_ID     LAST    FIRST STATE     REGION SEX    PROFESSION  \
0     CU13388     LEIF   ARNOLD    MI    Midwest   M        PROF-2   
1     CU13386     ALVA   VERNON    OK    Midwest   M       PROF-18   
2      CU6607   HECTOR  SUMMERS    MI    Midwest   M  Veterinarian   
3      CU7331  PATRICK  GARRETT    CA       West   M       PROF-46   
4      CU2624  CAITLYN     LOVE    NY  NorthEast   F      Clerical   

  BUY_INSURANCE  AGE  HAS_CHILDREN   ...     MONTHLY_CHECKS_WRITTEN  \
0            No   70             0   ...                          0   
1            No   24             0   ...                          9   
2            No   30             1   ...                          2   
3            No   43             0   ...                          4   
4            No   27             1   ...                          4   

   MORTGAGE_AMOUNT  N_TRANS_ATM  N_MORTGAGES  N_TRANS_TELLER  \
0                0            3            0               0   
1             3000            4            1               1   
2              980            4            1               3   
3                0            2            0               1   
4             5000            4            1               2   

  CREDIT_CARD_LIMITS  N_TRANS_KIOSK  N_TRANS_WEB_BANK       LTV  LTV_BIN  
0               2500              1                 0  17621.00   MEDIUM  
1               2500              1               450  22183.00     HIGH  
2                500              1               250  18805.25   MEDIUM  
3                800              1                 0  22574.75     HIGH  
4               3000              2              1500  17217.25   MEDIUM  

[5 rows x 31 columns]

6. Wrapping it up and closing things

Finally we need to wrap thing up and close our cursors and our connection to the database.

# close the cursors
cur2.close()
cur.close()

# close the connection to the database
con.close()

Useful links

cx_Oracle website

cx_Oracle documentation

cx_Oracle examples on GitHub

Watch out for more blog posts on using Python with Oracle, Oracle Data Mining and Oracle R Enterprise.

Relation Theory videos by CJ Date

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Here is a series of videos by CJ Date on Relational Theory.

Introduction video

An Introduction to set theory (videos on O’Reilly website)

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Nullology (videos on O’Reilly website)

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Nulls, Three-Valued Logic, and Missing Information (videos on O’Reilly website)

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The Closed World Assumption (videos on O’Reilly website)

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View Updating (videos on O’Reilly website)

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Oracle Code Online December 2017

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This week Oracle Code will be having an online event consisting of 5 tracks and with 3 presentations on each track.

This online Oracle Code event will be given in 3 different geographic regions on 12th, 13th and 14th December.

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I’ve been selected to give one of these talks, and I’ve given this talk at some live Oracle Code events and at JavaOne back in October.

The present is pre-recorded and I recorded this video back in September.

I hope to be online at the end of some of these presentations to answer any questions, but unfortunately due to changes with my work commitments I may not be able to be online for all of them.

The moderator for these events will take your questions (or you can send them to me here) and I will write a blog post answering all your questions.

Make SQL Great Again baseball call

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Make SQL great again baseball cap

Screenshot 2017 11 22 12 15 18

Let me know if you would like to order one.

They cost €15 + P&P